Check Dr. Hallinen’s Google scholar for the most up-to-date list.

Tong, A., Hallinen, K.M, Bhakare, A., Bodine, S.P., Gitai, Z., Muir, T.W. Release of the Staphylococcus aureus autoinducing peptide is enabled by active export of the biosynthetic intermediate, bioRxiv, (2026). Submitted, PNAS.

Fernandes Martins, G., Guardiola-Flores, K.A., Zaman, L., Horowitz, J.M., Hallinen, K.M.^, Wood, K. Cooperative antibiotic response in coupled biofilm and planktonic E. faecalis communities, eLife, 15:RP111949, (2026). ^Corresponding Author, Reviewed Preprint

Hallinen, K.M., Bodine, S.P., Stone, H.A., Muir, T.W, Wingreen, N.S., and Gitai, Z. Bacterial species with different nanocolony morphologies have distinct flow-dependent colonization behaviors, Proc. Natl. Acad. Sci., 122 (7) 2419899122, (2025).

Hallinen, K.M.#, Dempsey, R.#, Scholz, M.#, Yu, X., Linder, A., Randi, F., Sharma, A., Shaevitz, J. W., and Leifer, A. M. Decoding locomotion from population neural activity in moving C. elegans, eLife, 10 e66135, (2021). #Co-first authors

Hallinen, K.M.#, Karslake, J.# and Wood, K., Delayed antibiotic exposure induces population collapse in enterococcal communities with drug-resistant sub-populations, eLife, 9 e52813, (2020). #Co-first authors

Hallinen, K.M., Guardiola, K. and Wood, K., Fluorescent reporter plasmids for single-cell and bulk-level composition assays in E. faecalis,PLoS One, 15 (5), e0232539, (2020).

Yu, W., Hallinen, K.M., and Wood, K., Interplay between antibiotic efficacy and drug-induced lysis underlies enhanced biofilm formation at subinhibitory drug concentrations, Antimicrobial Agents and Chemotherapy 62 (1) e01603–17 (2018).

Matty, M., Mansfield, P., Hallinen, K., Albert, J., and Swendsen, R. Cluster Simulations for Multi-spin Potts Models, Journal of Statistical Mechanics:Theory and Experiment, 1, P01026, (2015)

Hallinen, K.M., Tristram-Nagle, S., and Nagle J. Volumetric Stability of Lipid Bilayers, Physical Chemistry Chemical Physics 14, 15452-15457 (2012).